200 000 HeLa cells were seeded in 6-well plates and transfected the next day with 0.5 µg DNA and 3 µL DreamFect.
This article demonstrates the efficiency of DreamFect transfection reagent from OZ Biosciences to efficiently transport DNA into HeLa cells.article reference:J. Proteome Res., 2014, 13 (6), pp 3038–3053 DOI: 10.1021/pr5002143
Characterization of Phosphorylation- and RNA-Dependent UPF1 Interactors by Quantitative Proteomics
Valentin Flury, Umberto Restuccia, Angela Bachi and Oliver MühlemannAbstract
Human up-frameshift 1 (UPF1) is an ATP-dependent RNA helicase and phosphoprotein implicated in several biological processes but is best known for its key function in nonsense-mediated mRNA decay (NMD). Here we employed a combination of stable isotope labeling of amino acids in cell culture experiments to determine by quantitative proteomics UPF1 interactors. We used this approach to distinguish between RNA-mediated and protein-mediated UPF1 interactors and to determine proteins that preferentially bind the hypo- or the hyper-phosphorylated form of UPF1. Confirming and expanding previous studies, we identified the eukaryotic initiation factor 3 (eIF3) as a prominent protein-mediated interactor of UPF1. However, unlike previously reported, eIF3 binds to UPF1 independently of UPF1’s phosphorylation state. Furthermore, our data revealed many nucleus-associated RNA-binding proteins that preferentially associate with hyper-phosphorylated UPF1 in an RNase-sensitive manner, suggesting that UPF1 gets recruited to mRNA and becomes phosphorylated before being exported to the cytoplasm as part of the mRNP.
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